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	<title>Wandering Thoughts</title>
	<subtitle>deviating from alife</subtitle>
        <link rel="alternate" type="text/html" href="http://www.bagofsouls.com/deviate.php"/>
        <link rel="self" type="application/atom+xml" href="http://bagofsouls.com/atom2.xml"/>
	<updated>2009-09-18T10:06:43+02:00</updated>
	<author>
	<name>bOR_</name>
	<uri>http://www.bagofsouls.com/deviate.php</uri>
	<email>boris.schmid@gmail.com</email>
	</author>
	<id>tag:bagofsouls,2009:WanderingThoughts</id>
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	<rights>Copyright (c) 2009, Authors of Wandering Thoughts</rights>
	
	
	
	<entry>
		<title>Mashing vector graphics with bitmaps</title>
		<link rel="alternate" type="text/html" href="http://bagofsouls.com/entry/40/Mashing_vector_graphics_with_b/wandering_thoughts" />
		<updated>2008-10-29T10:25:00+02:00</updated>
		<published>2008-10-24T15:31:00+02:00</published>
		<id>tag:bagofsouls,2009:WanderingThoughts.40</id>
		<link rel="related" type="text/html" href=""  />
		<summary type="text">When publishing figures, you want your images to look sharp. When processing figures with lots and lots and lots of data points (i.e. proteome comparisons), you do not want to store all these dots in a svg format. Rather, you want to convert the dots to a png picture, import the png into inkscape, and then add the axis, the labels and shuffle around the panels of your figure in the right order. 

To be able to do this while retaining quality, some magick is required.</summary>
        <content type="html" xml:lang="en" xml:base="http://bagofsouls.com/entry/40/Mashing_vector_graphics_with_b/wandering_thoughts"><![CDATA[
                When publishing figures, you want your images to look sharp. When processing figures with lots and lots and lots of data points (i.e. proteome comparisons), you do not want to store all these dots in a svg format. Rather, you want to convert the dots to a png picture, import the png into inkscape, and then add the axis, the labels and shuffle around the panels of your figure in the right order. <br />
<br />
To be able to do this while retaining quality, some magick is required.Basically - first figure out how much cm wide you want your panel to be. second, figure out what sharpness you want (dpi). 300 to 600 is usually enough to publish figures in.<br />
<br />
As an example, assume that we want a vector pdf image to be scaled to a 17 cm wide png, at a resolution of 600dpi. Using the magic formula of 17 * 600 / 2.56 == 3984 dots, we now know what command line parameters we need to pass to 'convert', the command line imagemagick utility present on a lot of linux distributions.  The command line that realizes your dreams is the following:<br />
<br />
<b>convert -density 600x600 -units PixelsPerInch plot_virus.pdf -resize 3984x plot_virus.png</b>
		]]></content>
		<author>
			<name>boris.schmid</name>
		</author>
	</entry>
	
	
	
	<entry>
		<title>One Twit to rule them all</title>
		<link rel="alternate" type="text/html" href="http://bagofsouls.com/entry/39/One_Twit_to_rule_them_all/wandering_thoughts" />
		<updated>2009-02-13T13:21:00+02:00</updated>
		<published>2008-10-23T11:04:00+02:00</published>
		<id>tag:bagofsouls,2009:WanderingThoughts.39</id>
		<link rel="related" type="text/html" href=""  />
		<summary type="text">Ran into a few blogposts that explained how I could synchronize my facebook and hyves updates by using twitter. he two applets you need are twwwitter and a facebook app to let hyves and facebook be updated by twitter.

It is that easy :). Now just to figure out how I put my twitters on my 'me' profile on this webpage, and we are slowly freeing ourselves from social websites.

update: It's also possible to update your gtalk status with your twitter messages, using twitter2gtalk
update2: It's also possible to get your friends' facebook status messages send back to twitter, using twitterfeed.com</summary>
        <content type="html" xml:lang="en" xml:base="http://bagofsouls.com/entry/39/One_Twit_to_rule_them_all/wandering_thoughts"><![CDATA[
                Ran into a few blogposts that explained how I could synchronize my facebook and hyves updates by using twitter. he two applets you need are <b>twwwitter</b> and a<b> facebook app</b> to let hyves and facebook be updated by twitter.<br />
<br />
It is that easy :). Now just to figure out how I put my twitters on my 'me' profile on this webpage, and we are slowly freeing ourselves from social websites.<br />
<br />
update: It's also possible to update your gtalk status with your twitter messages, using <b>twitter2gtalk</b><br />
update2: It's also possible to get your friends' facebook status messages send back to twitter, using <b>twitterfeed.com</b>Update hyves through twitter: <a target="_blank" href="http://oproer.com/twwwitter/">http://oproer.com/twwwitter/</a><br />
Update facebook through twitter: <a target="_blank" href="http://apps.facebook.com/twitter/">http://apps.facebook.com/twitter/</a><br />
Update gtalk status through twitter: <a target="_blank" href="http://twitter2gtalk.appspot.com/">http://twitter2gtalk.appspot.com</a><br />
Update twitter with facebook news items: <a target="_blank" href="http://twitterfeed.com/feed/list">http://twitterfeed.com/feed/list</a>
		]]></content>
		<author>
			<name>boris.schmid</name>
		</author>
	</entry>
	
	
	
	<entry>
		<title>Stabilizing camera movies</title>
		<link rel="alternate" type="text/html" href="http://bagofsouls.com/entry/37/Stabilizing_camera_movies/wandering_thoughts" />
		<updated>2008-09-07T12:22:00+02:00</updated>
		<published>2008-09-07T12:13:00+02:00</published>
		<id>tag:bagofsouls,2009:WanderingThoughts.37</id>
		<link rel="related" type="text/html" href=""  />
		<summary type="text">Have been making small movies with my photocamera this weekend, and put some effort into post-processing the movies. For some it was necessary to rotate the avi file by 90 degree, and for others some kind of image stabilization was very needed (I'm not a natural steady shot, which is interesting when you're shooting movies, handbows and crossbows). Doing these things is not as hard as may sound, and I've documented the howto here.</summary>
        <content type="html" xml:lang="en" xml:base="http://bagofsouls.com/entry/37/Stabilizing_camera_movies/wandering_thoughts"><![CDATA[
                Have been making small movies with my photocamera this weekend, and put some effort into post-processing the movies. For some it was necessary to rotate the avi file by 90 degree, and for others some kind of image stabilization was very needed (I'm not a natural steady shot, which is interesting when you're shooting movies, handbows and crossbows). Doing these things is not as hard as may sound, and I've documented the howto here.First - I had to download a number of programs, namely <a target="_blank" href="http://www.virtualdub.org/" title="Video editing">VirtualDub</a>, <a target="_blank" href="http://www.guthspot.se/video/deshaker.htm" title="Image stabilization software">Deshaker</a>, some <a target="_blank" href="http://www.microsoft.com/downloads/details.aspx?familyid=200B2FD9-AE1A-4A14-984D-389C36F85647" title="Microsoft drivers needed for Deshaker">drivers to go with Deshaker</a>, <a target="_blank" href="http://www.free-codecs.com/download/Koepi_XviD.htm" title="XviD">a video codec compressor called XviD</a>, and <a target="_blank" href="http://www.free-codecs.com/download/LAME_ACM_Codec.htm" title="MP3 Audio compression">an audio compressor called LAME</a>. Install everything.<br />
<br />
First off, how to rotate with VirtualDub is described on the internet on a few places. What you do is you open your video, go to Video, Filters, Add. Then select rotate, press `OK', select the angle of rotation you need and press OK again. After that, go to Video, Compression, select Xvid. If you are familiar with two-pass encoding you can press `configure' to configure that now (it's not that hard, but I'm not sure if it is worth the hassle on photo-camera clips), or just press `OK'. Now click File, Save AVI as, and select a new filename. Done!.<br />
<br />
Deshaking things takes a bit more work, but as I got everything working in about 2 hours, it isn't that hard. There is a pretty good <a target="_blank" href="http://www.guthspot.se/video/deshaker.htm" title="">guide</a> included with the Deshaker homepage. What I did, after some experimentation with settings was this: 1. open video, add the deshaker filter (in the same way as we added the rotation filter), select pass 1, click ok, press OK, and in the main screen of VirtualDub, click the `play output' button. Then go back to the filter menu and configure Deshaker for pass 2.  There I selected 'adaptive zoom only' and the 'use the previous and future frames to fill border' options. The next steps were to encode the whole video as a new video (see above). This leaves you with a nicely stabilized video, but with a possible small delay in the audio (and a black screen the first x seconds that explains this delay. Write down the number of frames that this delay is!) <br />
<br />
If you want to remove this black screen, an easy way is to reload the stabilized video as a new project into VirtualDub, then select `Direct stream copy' in both the video and audio menus, and then cutting away the the first x black screen seconds using the last two buttons on the bottom row of VirtualDub to designate where the output video should start and stop. This will take care of the visual part. Write down the info that is on the black screen somewhere (x frames, y milliseconds)<br />
<br />
Next up is to realign the audio. In the File menu, there is an entry called `File Information' where you can see how much frames per second your movie is. The black screen you just cut away also contained some text with the number of frames that the black screen was lasting, and which you hopefully remembered to remember. Now you can go to Audio, Interleaving and delay the audio track by the appropriate number of milliseconds (i.e. 30 fps and a delay due to Deshaker of 30 means you have to delay your audio by 1000ms). That being done, just save the trimmer, unshaking, and audio-aligned avi!
		]]></content>
		<author>
			<name>boris.schmid</name>
		</author>
	</entry>
	
	
	
	<entry>
		<title>Haiku</title>
		<link rel="alternate" type="text/html" href="http://bagofsouls.com/entry/35/Haiku/wandering_thoughts" />
		<updated>2008-06-14T13:35:00+02:00</updated>
		<published>2008-06-14T13:35:00+02:00</published>
		<id>tag:bagofsouls,2009:WanderingThoughts.35</id>
		<link rel="related" type="text/html" href=""  />
		<summary type="text">The sleeplessness of a friend of mine gave rise to a number of Haiku poems that he shared with me. I'm not often exposed to haiku, and was surprised by how much I liked them. Here are three of them.</summary>
        <content type="html" xml:lang="en" xml:base="http://bagofsouls.com/entry/35/Haiku/wandering_thoughts"><![CDATA[
                The sleeplessness of a friend of mine gave rise to a number of Haiku poems that he shared with me. I'm not often exposed to haiku, and was surprised by how much I liked them. Here are three of them.<span style="color:Orange;"><h2><br />
<p align='center'>Winds blow strong branches<br />
Creaking in the silence, dripping<br />
"Safe here", says the tree</p><br />
<br />
<p align='center'>Thunder bounces near<br />
The cars wail their panicked cries<br />
The tea warms my heart</p><br />
<br />
<p align='center'>Down in the ancient<br />
The deepcrow  calls to its mate<br />
Long since it went away</p><br />
</h2></span><br />
<br />
P.S. More information on deepcrows: <a target="_blank" href="http://www.penny-arcade.com/images/2007/20071010.jpg" title="Penny-arcade's deepcrows">here</a>
		]]></content>
		<author>
			<name>boris.schmid</name>
		</author>
	</entry>
	
	
	
	<entry>
		<title>Musicovery, Deezer</title>
		<link rel="alternate" type="text/html" href="http://bagofsouls.com/entry/9/Musicovery_Deezer/wandering_thoughts" />
		<updated>2008-01-25T14:27:00+02:00</updated>
		<published>2008-01-16T21:55:00+02:00</published>
		<id>tag:bagofsouls,2009:WanderingThoughts.9</id>
		<link rel="related" type="text/html" href=""  />
		<summary type="text">If you've given up on the US-only Pandora.com, and Last.FM hasn't snared you, then there's two france-based alternatives: Musicovery (excellent party interface) and Deezer (just excellent for music). The former is still accessible for everyone, and the latter can be unlocked with some javascript, so that you can access all the music on it.</summary>
        <content type="html" xml:lang="en" xml:base="http://bagofsouls.com/entry/9/Musicovery_Deezer/wandering_thoughts"><![CDATA[
                If you've given up on the US-only Pandora.com, and Last.FM hasn't snared you, then there's two france-based alternatives: Musicovery (excellent party interface) and Deezer (just excellent for music). The former is still accessible for everyone, and the latter can be unlocked with some javascript, so that you can access all the music on it.<a target="_blank" href="http://musicovery.com" title="">Musicovery.com</a> can be used right off the bat, but for <a target="_blank" href="http://deezer.com" title="">Deezer.com</a> to work for people outside France, You need to paste the following 1 line of javascript into the address bar of your browser once you are on the site, so that deezer thinks you are from France. The script changes the COUNTRY flag in the cookie that deezer sets. Just reload the website, and you can listen to any song on the website.<br />
<br />
<p align='left'><i>javascript:function SetCookie (name, value){var aujourdhui = new Date();var expdate=new Date();expdate.setTime(aujourdhui.getTime()+(24*60*60*1000));document.cookie = name + "=" + value + ";expires="+expdate.toGMTString()+";path=/";}SetCookie('COUNTRY', "FR");<br />
</i></p><br />
<br />
Updates: Pandora is occasionally accessible again through the website <a target="_blank" href="http://globalpandora.com" title="">globalpandora.com</a>.
		]]></content>
		<author>
			<name>boris.schmid</name>
		</author>
	</entry>
	
	
	
	<entry>
		<title>Microbia</title>
		<link rel="alternate" type="text/html" href="http://bagofsouls.com/entry/23/Microbia/wandering_thoughts" />
		<updated>2008-01-17T09:37:00+02:00</updated>
		<published>2007-08-07T19:56:00+02:00</published>
		<id>tag:bagofsouls,2009:WanderingThoughts.23</id>
		<link rel="related" type="text/html" href=""  />
		<summary type="text">This is just too cool. I just returned from an exposition called 'Genesis' in the central museum of utrecht, and saw a short movie of two dutch filmmakers (Floris Kaayk and Sil van der Woerd). These two have been creating (fictional) nature documentaries of artificial lifeforms. These movies are called "The order Electrus" and "Metalosis Maligna" and are definitely worth watching.</summary>
        <content type="html" xml:lang="en" xml:base="http://bagofsouls.com/entry/23/Microbia/wandering_thoughts"><![CDATA[
                This is just too cool. I just returned from an exposition called 'Genesis' in the central museum of utrecht, and saw a short movie of two dutch filmmakers (Floris Kaayk and Sil van der Woerd). These two have been creating (fictional) nature documentaries of artificial lifeforms. These movies are called "The order Electrus" and "Metalosis Maligna" and are definitely worth watching.Their website is <a target="_blank" href="http://www.microbia.nl/" title="http://www.microbia.nl/">http://www.microbia.nl/</a> , but their movies are also available on youtube. I'll link to them when I'm on a computer that can actually show Youtube movies ;).<br />
<br />
More news from the exposition were the robots from Luc Steels (<a target="_blank" href="http://arti.vub.ac.be/~steels/" title="">http://arti.vub.ac.be/~steels/</a>), who build robots based on the feedback loop principle: information isn't necessarily stored inside the robot, but is 'accessible' to the robotic system through a simple interaction. The difference boils down to a common split in robots: the Japanese walker bots that calculate every millisecond of their walk, and the bots that sort of react on being out of balance, acceleration and the force the ground exerts on their legs. The latter don't plan their movements, but have learned how to respond to their sensory input, which has been trained to learn a pattern of responses that corresponds with walking. The latter is definitely the more biological solution.
		]]></content>
		<author>
			<name>boris.schmid</name>
		</author>
	</entry>
	
	
	
	<entry>
		<title>Jabber web client with transports</title>
		<link rel="alternate" type="text/html" href="http://bagofsouls.com/entry/20/Jabber_web_client_with_transpo/wandering_thoughts" />
		<updated>2007-10-08T11:44:00+02:00</updated>
		<published>2007-06-29T14:15:00+02:00</published>
		<id>tag:bagofsouls,2009:WanderingThoughts.20</id>
		<link rel="related" type="text/html" href=""  />
		<summary type="text">Just a small thing: Colibri IM is a web-based java jabber client. The reason why you'd want to use something as unstable as jabber transports to communicate with your MSN / ICQ friends instead of MSN or Meebo's webchat interfaces?</summary>
        <content type="html" xml:lang="en" xml:base="http://bagofsouls.com/entry/20/Jabber_web_client_with_transpo/wandering_thoughts"><![CDATA[
                Just a small thing: Colibri IM is a web-based java jabber client. The reason why you'd want to use something as unstable as jabber transports to communicate with your MSN / ICQ friends instead of MSN or Meebo's webchat interfaces?Here's the reason: I'm not using <a target="_blank" href="http://violonix.jabber.ru/" title="">Colibri IM</a> as my major chat client, no. Google's gtalk chat app that is embedded into my gmail is what I use (which is also the reason why I don't use <a target="_blank" href="http://meebo.com" title="">Meebo</a>. I like the chat conversations to be stored just like email conversations. Don't have to write it down somewhere if you made an appointment or got an address over chat.)  the Colibry IM is just to subscribe and handle jabber transports that allows you to chat with your msn / icq friends through your gmail. And the nice bit of gmail? It treats chat conversations like email, so that you can easily retrieve something from them through search.<br />
<br />
First step is to log in to google talk, through the java applet: as server fill in talk.google.com, username: your full emailadres, password: your email password, set the port to 5223, and click on 'use ssl'.<br />
<br />
Next step: click on Jeti, account, manage services, add a jabber server which has an MSN transport in the server field, and click on change server. Then select a MSN transport server , and you are done! http://www.jabber.org/user/publicservers.shtml<br />
You should get your msn list popping up now in Jeti. Log out of Jeti, log into gmail, and you should have another contact in your chat list with the name of the server you used as MNS transport. Your contacts should also be showing up now. Happy chatting!
		]]></content>
		<author>
			<name>boris.schmid</name>
		</author>
	</entry>
	
	
	
	<entry>
		<title>The impact of a sunset</title>
		<link rel="alternate" type="text/html" href="http://bagofsouls.com/entry/13/The_impact_of_a_sunset/wandering_thoughts" />
		<updated>2007-08-08T08:52:00+02:00</updated>
		<published>2007-06-16T12:05:00+02:00</published>
		<id>tag:bagofsouls,2009:WanderingThoughts.13</id>
		<link rel="related" type="text/html" href=""  />
		<summary type="text">A sunset just passed by, and it is pretty. We've all seen thousands of sunsets (mainly in the evening), and for a moment I wonder what biological effects a sunset still has on human beings. Wikipedia has remarkably little to say on the topic of circadian rhythms or melanopsin-containing ganglion cells, which are the photosensitive cells in your eyes (not rods or cones) that are responsible for these nonvisual effects of light on your body.</summary>
        <content type="html" xml:lang="en" xml:base="http://bagofsouls.com/entry/13/The_impact_of_a_sunset/wandering_thoughts"><![CDATA[
                A sunset just passed by, and it is pretty. We've all seen thousands of sunsets (mainly in the evening), and for a moment I wonder what biological effects a sunset still has on human beings. Wikipedia has remarkably little to say on the topic of circadian rhythms or melanopsin-containing ganglion cells, which are the photosensitive cells in your eyes (not rods or cones) that are responsible for these nonvisual effects of light on your body.There are several known biological reactions that the specific light frequencies of a sunrise (and presumably sunset) has on your body. Our whole evolutionary history has had its rythem dictated by the coming and going of the sun, day in day out.  Even now, you are using sunrises and sunsets to adjust your circadian clock  to match the earths', and this internal clock is changing your hormone levels and doing all sorts of things.<br />
<br />
<p style="text-align:center;"><img src="http://bagofsouls.com/images/sunset.thumb.jpg" style="border:1px solid" title="Sunset in Nata, Botswana" alt="Sunset in Nata, Botswana" class="pivot-image" /></p><br />
<br />
Further back into the past, your whole evolutionary history (from the first <a target="_blank" href="http://scicom.ucsc.edu/SciNotes/0101/bacteria.html" title="article lightsensitive bacteria">lightsensitive bacteria</a>, floating around in the ocean and muddy pools, up to your life now), you have been sensitive to the cycle of day and night.. That is a staggering 4 billion years. All this time your eyes / antenna / photosensitive organels have been observing sunsets.<br />
<br />
<a target="_blank" href="http://www.jstage.jst.go.jp/article/jpa2/26/2/26_87/_article" title="Photoreception for circadian, neuroendocrine, and neurobehavioral regulation.">A recent article</a> (Mar 2007) in the journal of physiological anthropology quotes some of the studies currently being performed to study the influence these cells have on human beings: longterm effects as Seasonal Affective Disorder (SAD), sleep disorders, depression, senile dementia are candidates for light therapy. More interesting to me are the direct effects of light.. just an increase in the quantity wakes people up, immediately affecting behaviour and increasing cognitive performance. <br />
<br />
It will probably be a few decades ere science knows what watching the sunset does to a human being. Up till then, I'll just enjoy the feeling that comes over me when I do.
		]]></content>
		<author>
			<name>boris.schmid</name>
		</author>
	</entry>
	
	
	
	<entry>
		<title>The 100th Monkey</title>
		<link rel="alternate" type="text/html" href="http://bagofsouls.com/entry/12/The_100th_Monkey/wandering_thoughts" />
		<updated>2009-08-07T11:44:00+02:00</updated>
		<published>2007-06-14T22:28:00+02:00</published>
		<id>tag:bagofsouls,2009:WanderingThoughts.12</id>
		<link rel="related" type="text/html" href=""  />
		<summary type="text">Something I heard come up about a thousand times before, as it is a fairly popular story.. and as I am a biologist, my expert opinion ;) is requested *cough*. To stop the embarrassment of knowing nothing more than the story itself, I took it upon myself to study the story in a bit more detail..

But first, a summary of the hundredth monkey story:</summary>
        <content type="html" xml:lang="en" xml:base="http://bagofsouls.com/entry/12/The_100th_Monkey/wandering_thoughts"><![CDATA[
                Something I heard come up about a thousand times before, as it is a fairly popular story.. and as I am a biologist, my <i>expert opinion ;)</i> is requested *cough*. To stop the embarrassment of knowing nothing more than the story itself, I took it upon myself to study the story in a bit more detail..<br />
<br />
But first, a summary of the hundredth monkey story:<blockquote><p><br />
THE STORY OF "The Hundredth Monkey" has recently become popular in our culture as a strategy for social change. Lyall Watson first told it in Lifetide (pp147- 148), but its most widely known version is the opening to the book The Hundredth Monkey, by Ken Keyes. (See below.) The story is based on research with monkeys on a northern Japanese Island, and its central idea is that when enough individuals in a population adopt a new idea or behavior, there occurs an ideological breakthrough that allows this new awareness to be communicated directly from mind to mind without the connection of external experience and then all individuals in the population spontaneously adopt it. "It may be that when enough of us hold something to be true, it becomes true for everyone." (Watson, p148) <br />
</p></blockquote><br />
<br />
The complete version of this article, including references to the original scientific articles that appeared in <b>"Primates"</b>, is at the end of this post, but I will set out my own thoughts first <br />
<br />
Problem 1: facts don't report any mind-to-mind jumps of information<br />
The 100th monkey story assumes that given the choice, a monkey would prefer to wash his potato before eating it. However, within the initial population of monkeys, where the monkeys could just observe each others behavior, the washing behavior spread very slowly. More precisely, it seemed that it was mostly the young monkeys that were open enough to innovations to pick up the washing behavior. The behavior wasn't recorded to jump over to other islands. <br />
<br />
So the monkey story is completely disconnected from the morphic resonance idea. But lets turn towards the idea for a moment:<br />
<br />
Problem 2: logics behind Morphic Resonance.<br />
As hinted at by <a target="_blank" href="http://www.context.org/ICLIB/IC09/Myers.htm" title="">Elaine Myers</a> (also highlighted in the text below), the concept of Morphic Resonance must allow for new ideas to exist, despite the overwhelming morphic resonance field of an older, competing idea, in order to prevent new and original ideas to be immediately squashed by the billions of human monkeys that disagree with it. An example would be a scholar with the idea that the earth is round, rather than flat. The oldest recollection of this idea is from India in the 8th-9th century before christ, Later recollections of this idea are from Greece in the 1st century before Christ <a target="_blank" href="http://en.wikipedia.org/wiki/Flat_Earth" title="">(wikipedia link)</a>. Any scholar with this idea would be swamped and instantly converted by the collective force of the rest of the human population that firmly believed that the world was flat.<br />
<br />
Two options exist: either by some ranking order amongst ideas, 'better ideas' are not instantly squashed, and thus are allowed to take over the world, or ideas are being transferred through this field, but the choice of applying them still rests with the individual. The former seems to have been the suggestion made in the hundred monkey story. The fallacy in the story seems to be that it is inherently assumed that washing your food is definitely better than eating it dust-covered, but `what is better' very much depends on your point of view. <br />
<br />
In conclusion: the story of the 100th monkey can be rephrased into the hypothesis that once an idea exists in a collective consciousness, that information can be accessed more easily through tapping into that collective consciousness in a way that is currently unknown for science. Interestingly enough, this idea is fairly well testable,if you have a number of subpopulations of a particular species, put them into a situation where they have the chance to learn a new behaviour, and see if the number of populations that discovered the new behaviour increases exponentially over time. It might be easier to use something else than monkeys though. Ants perhaps?<br />
<br />
<br />
 -------- <br />
<br />
<blockquote><p><br />
http://www.context.org/ICLIB/IC09/Myers.htm <br />
<br />
<br />
THE STORY OF "The Hundredth Monkey" has recently become popular in our culture as a strategy for social change. Lyall Watson first told it in Lifetide (pp147- 148), but its most widely known version is the opening to the book The Hundredth Monkey, by Ken Keyes. (See below.) The story is based on research with monkeys on a northern Japanese Island, and its central idea is that when enough individuals in a population adopt a new idea or behavior, there occurs an ideological breakthrough that allows this new awareness to be communicated directly from mind to mind without the connection of external experience and then all individuals in the population spontaneously adopt it. "It may be that when enough of us hold something to be true, it becomes true for everyone." (Watson, p148) <br />
<br />
I found this to be a very appealing and believable idea. The concept of Jung's collective unconscious, and the biologists' morphogenetic fields offer parallel stories that help strengthen this strand of our imaginations. Archetypes, patterns, or fields that are themselves without mass or energy, could shape the individual manifestations of mass and energy. The more widespread these fields are, the greater their influence on the physical level of reality. We sometimes mention the Hundredth Monkey Phenomenon when we need supporting evidence of the possibility of an optimistic scenario for the future, especially a future based on peace instead of war. If enough of us will just think the right thoughts, then suddenly, almost magically, such ideas will become reality. <br />
<br />
However, when I went back to the original research reports cited by Watson, I did not find the same story that he tells. Where he claims to have had to improvise details, the research reports are quite precise, and they do not support the "ideological breakthrough" phenomenon. At first I was disappointed; but as I delved deeper into the research I found a growing appreciation for the lessons the real story of these monkeys has for us. Based on what I have learned from the Japan Monkey Center reports in Primates, vol. 2, vol. 5 and vol. 6, here is how the real story seems to have gone. <br />
<br />
Up until 1958, Keyes' description follows the research quite closely, although not all the young monkeys in the troop learned to wash the potatoes. By March, 1958, 15 of the 19 young monkeys (aged two to seven years} and 2 of the 11 adults were washing sweet potatoes. <b>Up to this time, the propagation of the innovative behavior was on an individual basis, along family lines and playmate relationships. Most of the young monkeys began to wash the potatoes when they were one to two and a half years old. Males older than 4 years, who had little contact with the young monkeys, did not acquire the behavior.</b> <br />
<br />
By 1959, the sweet potato washing was no longer a new behavior to the group. Monkeys that had acquired the behavior as juveniles were growing up and having their own babies. This new generation of babies learned sweet potato washing behavior through the normal cultural pattern of the young imitating their mothers. By January, 1962, almost all the monkeys in the Koshima troop, excepting those adults born before 1950, were observed to be washing their sweet potatoes. If an individual monkey had not started to wash sweet potatoes by the time he was an adult, he was unlikely to learn it later, regardless of how widespread it became among the younger members of the troop.<br />
<br />
<b>In the original reports, there was no mention of the group passing a critical threshold that would impart the idea to the entire troop. The older monkeys remained steadfastly ignorant of the new behavior. Likewise, there was no mention of widespread sweet potato washing in other monkey troops.</b> There was mention of occasional sweet potato washing by individual monkeys in other troops, but I think there are other simpler explanations for such occurrences. If there was an Imo in one troop, there could be other Imo-like monkeys in other troops. <br />
<br />
Instead of an example of the spontaneous transmission of ideas, I think the story of the Japanese monkeys is a good example of the propagation of a paradigm shift, as in Thomas Kuhn's The Structure of Scientific Revolutions. The truly innovative points of view tend to come from those on the edge between youth and adulthood. The older generation continues to cling to the world view they grew up with. The new idea does not become universal until the older generation withdraws from power, and a younger generation matures within the new point of view. <br />
<br />
It is also an example of the way that simple innovations can lead to extensive cultural change. By using the water in connection with their food, the Koshima monkeys began to exploit the sea as a resource in their environment. Sweet potato washing led to wheat washing, and then to bathing behavior and swimming, and the utilization of sea plants and animals for food. "Therefore, provisioned monkeys suffered changes in their attitude and value system and were given foundations on which pre-cultural phenomena developed." (M Kawai, Primates, Vol 6, #1, 1965). <br />
<br />
What does this say about morphogenetic fields, and the collective unconscious? Not very much, but the "ideological breakthrough" idea is not what Sheldrake's theory of morphogenetic fields would predict anyway. That theory would recognize that the behavior of the older monkeys (not washing) also is a well-established pattern. There may well be a "critical mass" required to shift a new behavior from being a fragile personal idiosyncrasy to being a well-established alternative, <b>but creating a new alternative does not automatically displace older alternatives. It just provides more choices. </b>It is possible that the washing alternative established by the monkeys on Koshima Island did create a morphogenetic field that made it easier for monkeys on other islands to "discover" the same technique, but the actual research neither supports nor denies that idea. It remains for other cultural experiments and experiences to illuminate this question. <br />
<br />
What the research does suggest, however, is that holding positive ideas (as important a step as this is) is not sufficient by itself to change the world. We still need direct communication between individuals, we need to translate our ideas into action, and we need to recognize the freedom of choice of those who choose alternatives different from our own. </p></blockquote>
		]]></content>
		<author>
			<name>boris.schmid</name>
		</author>
	</entry>
	
	
	
	<entry>
		<title>Commuting by Bike</title>
		<link rel="alternate" type="text/html" href="http://bagofsouls.com/entry/10/Commuting_by_Bike/wandering_thoughts" />
		<updated>2008-01-16T18:37:00+02:00</updated>
		<published>2007-06-04T23:43:00+02:00</published>
		<id>tag:bagofsouls,2009:WanderingThoughts.10</id>
		<link rel="related" type="text/html" href=""  />
		<summary type="text">Spotted an article from some american in Amsterdam (capital of the my country) about bikes. Brought a big smile to my face to see his pictures of biking people and read his suprised comments about our biking habits. Bikes are such a great way to navigate our compact cities!</summary>
        <content type="html" xml:lang="en" xml:base="http://bagofsouls.com/entry/10/Commuting_by_Bike/wandering_thoughts"><![CDATA[
                Spotted an article from some american in Amsterdam (capital of the my country) about bikes. Brought a big smile to my face to see his pictures of biking people and read his suprised comments about our biking habits. Bikes are such a great way to navigate our compact cities!Snippet:<br />
<blockquote><p>I really like the picture below showing that this bike has an approved child safety seat, but the child is standing vertically up in it to get a better view.  No child helmet, just a child (and mother) who isn't afraid of a little adventure.  Remember, this is a busy complicated 3 way intersection with cars whizzing through it and as far as I could tell no clear signs or any clear pattern of traffic, just quick witted and dexterous Amsterdam natives - on bicycles.</p></blockquote><br />
<p align='right'><b>Link to the <a target="_blank" href="http://www.ski-epic.com/amsterdam_bicycles/" title="Bikes in Amsterdam">Full article</a></b></p>
		]]></content>
		<author>
			<name>boris.schmid</name>
		</author>
	</entry>
	
	
	
	<entry>
		<title>The missing fossile link</title>
		<link rel="alternate" type="text/html" href="http://bagofsouls.com/entry/5/The_missing_fossile_link/wandering_thoughts" />
		<updated>2007-06-20T23:50:00+02:00</updated>
		<published>2007-05-26T22:01:00+02:00</published>
		<id>tag:bagofsouls,2009:WanderingThoughts.5</id>
		<link rel="related" type="text/html" href=""  />
		<summary type="text">If I remember correctly, one of the criticisms on the evolution theory, is the gaps in the fossile record. There has long been a search for fossiles of ape-men, and of other in-between species (reptiles and mammals, for example). With my understanding and knowledge of biological experiments on the evolution of species expanding, I wonder if this gap has not yet been closed.. not by finding fossiles (which may have well occurred with me being unaware of it), but by the observation that evolution isn't the slooooooooooooow process people expect it to be.</summary>
        <content type="html" xml:lang="en" xml:base="http://bagofsouls.com/entry/5/The_missing_fossile_link/wandering_thoughts"><![CDATA[
                If I remember correctly, one of the criticisms on the evolution theory, is the gaps in the fossile record. There has long been a search for fossiles of ape-men, and of other in-between species (reptiles and mammals, for example). With my understanding and knowledge of biological experiments on the evolution of species expanding, I wonder if this gap has not yet been closed.. not by finding fossiles (which may have well occurred with me being unaware of it), but by the observation that evolution isn't the slooooooooooooow process people expect it to be.It is slow. It must be. One of the best documented species on the planet, <i>-us-</i>,  hasn't changed dramatically in the last 2000-4000 years, now has it?  Well, you might argue that we've increased a decent amount in size (<a target="_blank" href="http://www.theage.com.au/articles/2004/04/11/1081621836499.html" title="">although that is not completely accurate</a>), came to live quite a bit longer, and are currently evolving into a weightier species. <br />
<br />
Our own example might not neccesarily be a good indication of the general speed by which species evolve. While it may be a tough world out there, the human race is in general not under a high selection pressure (and our strong culture might have even turned some biological rules upside down), and selection pressure might be one of the driving forces behind speciation <span style="color:Green;">(I'll have to read <a target="_blank" href="http://philsci-archive.pitt.edu/archive/00002331/01/baker-speciation-2005.pdf" title="article on selection and speciation">this article</a> to check if I'm not falling into some logical trap, and will summarize it afterwards)</span>.<br />
 <br />
For our own species, selection of the fittest is becoming a complicated matter, and thus the rules of evolution for humankind might not be the same as those for naturally living animals. In humans, no longer do those humans that in our western eyes are <i>'the fittest'</i> produce the most offspring: population numbers in europe and the western world are on a decline, whereas third world nations have a higher growthrate (<a target="_blank" href="http://www.un.org/esa/population/publications/sixbillion/sixbilpart1.pdf" title="">UN report, table 3</a>).<br />
<br />
Returning to animals. If I remember the chiclide stories of the Victiora Lake in africa well, then these fish were very quick to evolve into new species by diversifying mating and feeding habits. These fish have the remarkable property of being very plastic in their phenotype: a few changes in gene expression or gene duplication could cause a large differntiation on phenotype (the physical appearance) of these fish, allowing for quick speciation. <br />
<br />
Here is the theory. If speciation happens almost exclusively in situations when there is a large amount of selection pressure, and for that reason happens way faster then the 'rate of change' we observe in static species.. then we might be overestimating the number of 'in between-fossiles' that should be found based on probability. If between 40.000 years of humanity (~1600 generations) and 200.000 years of chimp-like animals (~40.000 generations) (I'll have to find some refs for these estimates) there were 10 generations of 'large changes' - in which we straightened up, lost our fur, altered out feet to a less handlike variant.. then the odds of finding a fossile of a small group of apes that went out of the forest to do something different, amidst a large group of apes that did not, over a period of 250 years before they small group of apes looked human enough (phenotypic plasticity).. well. the feeling is that those odds aren't good.<br />
<br />
Not sure if it is an alternative to 'selection pressure', or just a different description, but if a species ends up in an environment that it is not adapted for, then the above might also apply.<br />
<br />
------<br />
Alternative options to the 'slim chance', or perhaps contributing options is the 'neutral net' theory of mutations. The theory states that within a population, there can be considerable genetic differences between species, while phenotypically they still function and look the same. In this population with a wide genetic spread, some of the members might be only a few mutations away from making a large phenotypic change. I'll expand this bit later, or leave it out entirely.. depends on what fits the story.
		]]></content>
		<author>
			<name>boris.schmid</name>
		</author>
	</entry>
	
	
	
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